MicroRNA Atlas For Animals And Plants

Introduction:

MicroRNAs (miRNAs) are a novel class of small non-coding RNAs that regulate gene expression at the post-transcriptional level and play a critical role in many important biological processes in animals including humans. Most miRNAs are conserved between humans and mice, which makes it possible to analyze their expression patterns with a set of selected array probes. The maps of expression of selected miRNAs from different species, organs/tissues, or cell lines can be tentatively termed "microRNA atlas". Similarly in plants, most miRNAs so far identified are very conserved between species although the expression patterns of these conserved miRNAs are different between plant species, organs/tissues, or cell lines.

In mammals, miRNA expression atlas as a powerful resource has recently been drawn based on small RNA library sequencing (Cell, Vol 129, 1410-1414, 29 June 2007). With different samples to be studied, the miRNA atlas will be continuiously enlarged. To simplify the mapping process and to reduce the cost of drafting a miRNA atlas for specific species, organs, tissues, or cell types, we employed our recently established simple array platform (RNA, Vol 13, 1803-1822, 3 August 2007) to draft a framework of miRNA atlas for humans/mice and plants as demonstrated below. The miRNA atlas is based on the endogenous miRNAs with no amplification, truely reflecting the in vivo levels and changes of miRNAs. We believe that this simple miRNA atlas will be a useful guider to the study of miRNAs and their functions in plants and animals.

With a single miRNA atlas for your specific, normal organs/tissues/cells, you may start to study roles of miRNAs without further array for more samples of the same materials from different resources by probing those miRNAs highlighted on the miRNA atlas with traditional Northern blot analysis. For example, totally 38 miRNAs were highlighted in liver organ, miR122a is highly abundant, no miR124a that is highly expressed in central nerve system was detectable in liver. Therefore, you could synthesize 38 probes specifically for liver expressed miRNAs without need of addressing other miRNAs, such as miR124a, to study the functions of the 38 miRNAs, including the highly expressed miR122a, in liver, simply using the traditional Northern blot analysis.

(To draw a miRNA atlas for your species, please contact us by email: gtang1@mtu.edu)

A. Mouse miRNA atlas:

mousemiR 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microRNA atlas of a few mouse tissues

To know what are those microRNAs on the maps, point your mouse to any miRNA spot to display the miRNA name; click the spot and you will be linked out to specific miRNA in miRBase to find the functions of the miRNA.

B. Plant miRNA atlas

wheatmiRNA MAC6 osamiR817 osamiR818a osamiR816 osamiR815a osamiR814a osamiR813 osamiR812a osamiR810 osamiR811a osamiR426 athmiR426 osamiR435 osamiR445d osamiR443 osamiR444 osamiR439h osamiR441c osamiR438 osamiR437 osamiR806a osamiR807a osamiR808 osamiR809a osamiR420 athmiR420 osamiR419 athmiR419 athmiR406 athmiR407 osamiR408 osamiR442 osamiR440 osamiR413 sofmiR408e athmiR413 osamiR414 osamiR415 athmiR414 athmiR415 osamiR416 athmiR416 osamiR396a ptcmiR397b osamiR396d ptcmiR399h ptcmiR399l mtrmiR399d athmiR403 athmiR401 athmiR405a athmiR404 athmiR418 osamiR418 osamiR417 athmiR417 ptcmiR397c athmiR397b athmiR398a osamiR398b osamiR395c mtrmiR395b osamiR395a athmiR400 athmiR402 osamiR395v osamiR395u osamiR395w ptcmiR396f zmamiR399b osamiR399j osamiR399k ptcmiR399k ptcmiR399j athmiR399e ptcmiR399d osamiR399a osamiR399h mtrmiR395a osamiR395t ptcmiR395a ptcmiR169aa athmiR170 gmamiR319c athmiR319a osamiR319a athmiR172b* athmiR173 mtrmiR171 osamiR171b osamiR171a athmiR390a ptcmiR319i athmiR391 athmiR395b osamiR393b sbimiR156e ptcmiR156k athmiR171c osamiR171h ptcmiR172i ptcmiR172g zmamiR171c zmamiR171f osamiR171i osamiR171g athmiR156h athmiR156a osamiR156k ptcmiR169y ptcmiR169z athmiR394a athmiR157a athmiR159a athmiR158a sofmiR159e ptcmiR159f athmiR160a ptcmiR159e sbimiR164c osamiR164c ptcmiR164f athmiR163 osamiR162a athmiR164a osamiR160f ptcmiR160g ptcmiR160h ptcmiR167h osamiR168b ptcmiR166p athamiR167a osamiR166l osamiR166i athmiR166a athmiR165a osamiR162b sofmiR168b athmiR168a osamiR169e ptcmiR473a ptcmiR473b ptcmiR472b athmiR161 osamiR168a athmiR447b ptcmiR472a athmiR447c osamiR446 osamiR169p athmiR169g* ptcmiR169ab osamiR169n osamiR169q ptcmiR478a ptcmiR478m ptcmiR478e ptcmiR477a ptcmiR476a ptcmiR476c ptcmiR474a ptcmiR475d ptcmiR474b ptcmiR474c athmiR169a ptcmiR169x zmamiR169d osamiR169d ptcmiR479 ptcmiR480a ptcmiR480b ptcmiR481d pptmiR538c pptmiR537a pptmiR536 ptcmiR475c ptcmiR475b pptmiR533 pptmiR534 osamiR535 osamiR531 osamiR530 osamiR529 osamiR528 ptcmiR482 ptcmiR481b osamiR819a osamiR820a osamiR821a MAC3 MAC5 MAC4 MAC4 MAC5 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817 MAC6

MAC5 MAC4 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817

MAC6 osamiR817 osamiR818a osamiR816 osamiR815a osamiR814a osamiR813 osamiR812a osamiR810 osamiR811a osamiR426 athmiR426 osamiR435 osamiR445d osamiR443 osamiR444 osamiR439h osamiR441c osamiR438 osamiR437 osamiR806a osamiR807a osamiR808 osamiR809a osamiR420 athmiR420 osamiR419 athmiR419 athmiR406 athmiR407 osamiR408 osamiR442 osamiR440 osamiR413 sofmiR408e athmiR413 osamiR414 osamiR415 athmiR414 athmiR415 osamiR416 athmiR416 osamiR396a ptcmiR397b osamiR396d ptcmiR399h ptcmiR399l mtrmiR399d athmiR403 athmiR401 athmiR405a athmiR404 athmiR418 osamiR418 osamiR417 athmiR417 ptcmiR397c athmiR397b athmiR398a osamiR398b osamiR395c mtrmiR395b osamiR395a athmiR400 athmiR402 osamiR395v osamiR395u osamiR395w ptcmiR396f zmamiR399b osamiR399j osamiR399k ptcmiR399k ptcmiR399j athmiR399e ptcmiR399d osamiR399a osamiR399h mtrmiR395a osamiR395t ptcmiR395a ptcmiR169aa athmiR170 gmamiR319c athmiR319a osamiR319a athmiR172b* athmiR173 mtrmiR171 osamiR171b osamiR171a athmiR390a ptcmiR319i athmiR391 athmiR395b osamiR393b sbimiR156e ptcmiR156k athmiR171c osamiR171h ptcmiR172i ptcmiR172g zmamiR171c zmamiR171f osamiR171i osamiR171g athmiR156h athmiR156a osamiR156k ptcmiR169y ptcmiR169z athmiR394a athmiR157a athmiR159a athmiR158a sofmiR159e ptcmiR159f athmiR160a ptcmiR159e sbimiR164c osamiR164c ptcmiR164f athmiR163 osamiR162a athmiR164a osamiR160f ptcmiR160g ptcmiR160h ptcmiR167h osamiR168b ptcmiR166p athamiR167a osamiR166l osamiR166i athmiR166a athmiR165a osamiR162b sofmiR168b athmiR168a osamiR169e ptcmiR473a ptcmiR473b ptcmiR472b athmiR161 osamiR168a athmiR447b ptcmiR472a athmiR447c osamiR446 osamiR169p athmiR169g* ptcmiR169ab osamiR169n osamiR169q ptcmiR478a ptcmiR478m ptcmiR478e ptcmiR477a ptcmiR476a ptcmiR476c ptcmiR474a ptcmiR475d ptcmiR474b ptcmiR474c athmiR169a ptcmiR169x zmamiR169d osamiR169d ptcmiR479 ptcmiR480a ptcmiR480b ptcmiR481d pptmiR538c pptmiR537a pptmiR536 ptcmiR475c ptcmiR475b pptmiR533 pptmiR534 osamiR535 osamiR531 osamiR530 osamiR529 osamiR528 ptcmiR482 ptcmiR481b osamiR819a osamiR820a osamiR821a MAC3 MAC5 MAC4 MAC4 MAC5 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817 MAC6 MAC6 MAC5 osamiR171i athmiR404 pptmiR536 ptcmiR473b ptcmiR160h athmiR426 ptcmiR481b osamiR437 osamiR156k athmiR157a ptcmiR159e osamiR439h osamiR529 athmiR418 ptcmiR399d ptcmiR478a ptcmiR160g athmiR397b osamiR166i ptcmiR481d MAC3 osamiR815a ptcmiR482 zmamiR171f osamiR395u sbimiR156e athmiR390a osamiR420 osamiR426 ptcmiR395a athmiR406 zmamiR171c ptcmiR474b osamiR535 osamiR160f sofmiR159e ptcmiR475b osamiR396d athmiR415 athmiR394a osamiR811a athamiR167a athmiR405a ptcmiR397b osamiR408 ptcmiR169ab osamiR528 athmiR161 ptcmiR474c osamiR821a ptcmiR473a ptcmiR474a athmiR158a athmiR416 osamiR171h sofmiR168b ptcmiR399h pptmiR533 pptmiR534 osamiR169d osamiR168a osamiR168b ptcmiR479 ptcmiR172g osamiR399a osamiR819a athmiR391 osamiR446 ptcmiR478m osamiR814a athmiR160a osamiR395v ptcmiR167h ptcmiR472b osamiR169p athmiR163 osamiR531 athmiR159a osamiR417 ptcmiR169x athmiR447b ptcmiR480a osamiR816 osamiR395t ptcmiR478e ptcmiR169aa osamiR395w osamiR171a osamiR171b osamiR441c osamiR813 osamiR418 osamiR817 athmiR156h ptcmiR476a osamiR419 osamiR399j athmiR414 mtrmiR171 athmiR407 osamiR399h athmiR400 athmiR171c osamiR442 ptcmiR472a ptcmiR480b osamiR438 gmamiR319c athmiR170 osamiR162a athmiR319a mtrmiR395b athmiR398a ptcmiR169y osamiR169e osamiR395a osamiR166l ptcmiR397c ptcmiR477a osamiR415 zmamiR169d zmamiR399b ptcmiR396f osamiR162b athmiR403 osamiR820a osamiR393b athmiR417 pptmiR537a athmiR169g* ptcmiR172i osamiR319a osamiR399k athmiR399e athmiR419 ptcmiR399j athmiR173 ptcmiR399k ptcmiR159f athmiR166a ptcmiR169z osamiR812a mtrmiR399d athmiR169a osamiR413 osamiR806a ptcmiR399l osamiR171g osamiR395c athmiR402 ptcmiR164f sofmiR408e osamiR444 osamiR807a osamiR414 osamiR398b mtrmiR395a ptcmiR476c ptcmiR475d osamiR164c osamiR396a osamiR169n osamiR443 osamiR818a osamiR810 ptcmiR475c osamiR445d osamiR809a MAC4 athmiR447c ptcmiR319i athmiR156a osamiR808 osamiR169q athmiR413 osamiR530 athmiR168a athmiR172b* osamiR435 ptcmiR156k athmiR395b pptmiR538c athmiR401 osamiR416 sbimiR164c athmiR165a osamiR440 athmiR420 ptcmiR166p athmiR164a MAC6 MAC4 MAC5 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817 MAC6 MAC5 osamiR171i athmiR404 pptmiR536 ptcmiR473b ptcmiR160h athmiR426 ptcmiR481b osamiR437 osamiR156k athmiR157a ptcmiR159e osamiR439h osamiR529 athmiR418 ptcmiR399d ptcmiR478a ptcmiR160g athmiR397b osamiR166i ptcmiR481d MAC3 osamiR815a ptcmiR482 zmamiR171f osamiR395u sbimiR156e athmiR390a osamiR420 osamiR426 ptcmiR395a athmiR406 zmamiR171c ptcmiR474b osamiR535 osamiR160f sofmiR159e ptcmiR475b osamiR396d athmiR415 athmiR394a osamiR811a athamiR167a athmiR405a ptcmiR397b osamiR408 ptcmiR169ab osamiR528 athmiR161 ptcmiR474c osamiR821a ptcmiR473a ptcmiR474a athmiR158a athmiR416 osamiR171h sofmiR168b ptcmiR399h pptmiR533 pptmiR534 osamiR169d osamiR168a osamiR168b ptcmiR479 ptcmiR172g osamiR399a osamiR819a athmiR391 osamiR446 ptcmiR478m osamiR814a athmiR160a osamiR395v ptcmiR167h ptcmiR472b osamiR169p athmiR163 osamiR531 athmiR159a osamiR417 ptcmiR169x athmiR447b ptcmiR480a osamiR816 osamiR395t ptcmiR478e ptcmiR169aa osamiR395w osamiR171a osamiR171b osamiR441c osamiR813 osamiR418 osamiR817 athmiR156h ptcmiR476a osamiR419 osamiR399j athmiR414 mtrmiR171 athmiR407 osamiR399h athmiR400 athmiR171c osamiR442 ptcmiR472a ptcmiR480b osamiR438 gmamiR319c athmiR170 osamiR162a athmiR319a mtrmiR395b athmiR398a ptcmiR169y osamiR169e osamiR395a osamiR166l ptcmiR397c ptcmiR477a osamiR415 zmamiR169d zmamiR399b ptcmiR396f osamiR162b athmiR403 osamiR820a osamiR393b athmiR417 pptmiR537a athmiR169g* ptcmiR172i osamiR319a osamiR399k athmiR399e athmiR419 ptcmiR399j athmiR173 ptcmiR399k ptcmiR159f athmiR166a ptcmiR169z osamiR812a mtrmiR399d athmiR169a osamiR413 osamiR806a ptcmiR399l osamiR171g osamiR395c athmiR402 ptcmiR164f sofmiR408e osamiR444 osamiR807a osamiR414 osamiR398b mtrmiR395a ptcmiR476c ptcmiR475d osamiR164c osamiR396a osamiR169n osamiR443 osamiR818a osamiR810 ptcmiR475c osamiR445d osamiR809a MAC4 athmiR447c ptcmiR319i athmiR156a osamiR808 osamiR169q athmiR413 osamiR530 athmiR168a athmiR172b* osamiR435 ptcmiR156k athmiR395b pptmiR538c athmiR401 osamiR416 sbimiR164c athmiR165a osamiR440 athmiR420 ptcmiR166p athmiR164a wheatmiRNA MAC6 osamiR817 osamiR818a osamiR816 osamiR815a osamiR814a osamiR813 osamiR812a osamiR810 osamiR811a osamiR426 athmiR426 osamiR435 osamiR445d osamiR443 osamiR444 osamiR439h osamiR441c osamiR438 osamiR437 osamiR806a osamiR807a osamiR808 osamiR809a osamiR420 athmiR420 osamiR419 athmiR419 athmiR406 athmiR407 osamiR408 osamiR442 osamiR440 osamiR413 sofmiR408e athmiR413 osamiR414 osamiR415 athmiR414 athmiR415 osamiR416 athmiR416 osamiR396a ptcmiR397b osamiR396d ptcmiR399h ptcmiR399l mtrmiR399d athmiR403 athmiR401 athmiR405a athmiR404 athmiR418 osamiR418 osamiR417 athmiR417 ptcmiR397c athmiR397b athmiR398a osamiR398b osamiR395c mtrmiR395b osamiR395a athmiR400 athmiR402 osamiR395v osamiR395u osamiR395w ptcmiR396f zmamiR399b osamiR399j osamiR399k ptcmiR399k ptcmiR399j athmiR399e ptcmiR399d osamiR399a osamiR399h mtrmiR395a osamiR395t ptcmiR395a ptcmiR169aa athmiR170 gmamiR319c athmiR319a osamiR319a athmiR172b* athmiR173 mtrmiR171 osamiR171b osamiR171a athmiR390a ptcmiR319i athmiR391 athmiR395b osamiR393b sbimiR156e ptcmiR156k athmiR171c osamiR171h ptcmiR172i ptcmiR172g zmamiR171c zmamiR171f osamiR171i osamiR171g athmiR156h athmiR156a osamiR156k ptcmiR169y ptcmiR169z athmiR394a athmiR157a athmiR159a athmiR158a sofmiR159e ptcmiR159f athmiR160a ptcmiR159e sbimiR164c osamiR164c ptcmiR164f athmiR163 osamiR162a athmiR164a osamiR160f ptcmiR160g ptcmiR160h ptcmiR167h osamiR168b ptcmiR166p athamiR167a osamiR166l osamiR166i athmiR166a athmiR165a osamiR162b sofmiR168b athmiR168a osamiR169e ptcmiR473a ptcmiR473b ptcmiR472b athmiR161 osamiR168a athmiR447b ptcmiR472a athmiR447c osamiR446 osamiR169p athmiR169g* ptcmiR169ab osamiR169n osamiR169q ptcmiR478a ptcmiR478m ptcmiR478e ptcmiR477a ptcmiR476a ptcmiR476c ptcmiR474a ptcmiR475d ptcmiR474b ptcmiR474c athmiR169a ptcmiR169x zmamiR169d osamiR169d ptcmiR479 ptcmiR480a ptcmiR480b ptcmiR481d pptmiR538c pptmiR537a pptmiR536 ptcmiR475c ptcmiR475b pptmiR533 pptmiR534 osamiR535 osamiR531 osamiR530 osamiR529 osamiR528 ptcmiR482 ptcmiR481b osamiR819a osamiR820a osamiR821a MAC3 MAC5 MAC4 MAC4 MAC5 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817 MAC6 MAC6 osamiR817 osamiR818a osamiR816 osamiR815a osamiR814a osamiR813 osamiR812a osamiR810 osamiR811a osamiR426 athmiR426 osamiR435 osamiR445d osamiR443 osamiR444 osamiR439h osamiR441c osamiR438 osamiR437 osamiR806a osamiR807a osamiR808 osamiR809a osamiR420 athmiR420 osamiR419 athmiR419 athmiR406 athmiR407 osamiR408 osamiR442 osamiR440 osamiR413 sofmiR408e athmiR413 osamiR414 osamiR415 athmiR414 athmiR415 osamiR416 athmiR416 osamiR396a ptcmiR397b osamiR396d ptcmiR399h ptcmiR399l mtrmiR399d athmiR403 athmiR401 athmiR405a athmiR404 athmiR418 osamiR418 osamiR417 athmiR417 ptcmiR397c athmiR397b athmiR398a osamiR398b osamiR395c mtrmiR395b osamiR395a athmiR400 athmiR402 osamiR395v osamiR395u osamiR395w ptcmiR396f zmamiR399b osamiR399j osamiR399k ptcmiR399k ptcmiR399j athmiR399e ptcmiR399d osamiR399a osamiR399h mtrmiR395a osamiR395t ptcmiR395a ptcmiR169aa athmiR170 gmamiR319c athmiR319a osamiR319a athmiR172b* athmiR173 mtrmiR171 osamiR171b osamiR171a athmiR390a ptcmiR319i athmiR391 athmiR395b osamiR393b sbimiR156e ptcmiR156k athmiR171c osamiR171h ptcmiR172i ptcmiR172g zmamiR171c zmamiR171f osamiR171i osamiR171g athmiR156h athmiR156a osamiR156k ptcmiR169y ptcmiR169z athmiR394a athmiR157a athmiR159a athmiR158a sofmiR159e ptcmiR159f athmiR160a ptcmiR159e sbimiR164c osamiR164c ptcmiR164f athmiR163 osamiR162a athmiR164a osamiR160f ptcmiR160g ptcmiR160h ptcmiR167h osamiR168b ptcmiR166p athamiR167a osamiR166l osamiR166i athmiR166a athmiR165a osamiR162b sofmiR168b athmiR168a osamiR169e ptcmiR473a ptcmiR473b ptcmiR472b athmiR161 osamiR168a athmiR447b ptcmiR472a athmiR447c osamiR446 osamiR169p athmiR169g* ptcmiR169ab osamiR169n osamiR169q ptcmiR478a ptcmiR478m ptcmiR478e ptcmiR477a ptcmiR476a ptcmiR476c ptcmiR474a ptcmiR475d ptcmiR474b ptcmiR474c athmiR169a ptcmiR169x zmamiR169d osamiR169d ptcmiR479 ptcmiR480a ptcmiR480b ptcmiR481d pptmiR538c pptmiR537a pptmiR536 ptcmiR475c ptcmiR475b pptmiR533 pptmiR534 osamiR535 osamiR531 osamiR530 osamiR529 osamiR528 ptcmiR482 ptcmiR481b osamiR819a osamiR820a osamiR821a MAC3 MAC5 MAC4 MAC4 MAC5 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817 MAC6

MAC4 MAC5 MAC3 osamiR821a osamiR820a osamiR819a ptcmiR481b ptcmiR482 osamiR528 osamiR529 osamiR530 osamiR531 osamiR535 pptmiR534 pptmiR533 ptcmiR475b ptcmiR475c pptmiR536 pptmiR537a pptmiR538c ptcmiR481d ptcmiR480b ptcmiR480a ptcmiR479 osamiR169d zmamiR169d ptcmiR169x athmiR169a ptcmiR474c ptcmiR474b ptcmiR475d ptcmiR474a ptcmiR476c ptcmiR476a ptcmiR477a ptcmiR478e ptcmiR478m ptcmiR478a osamiR169q osamiR169n ptcmiR169ab athmiR169g* osamiR169p osamiR446 athmiR447c ptcmiR472a athmiR447b osamiR168a athmiR161 ptcmiR472b ptcmiR473b ptcmiR473a osamiR169e athmiR168a sofmiR168b osamiR162b athmiR165a athmiR166a osamiR166i osamiR166l athamiR167a ptcmiR166p osamiR168b ptcmiR167h ptcmiR160h ptcmiR160g osamiR160f athmiR164a osamiR162a athmiR163 ptcmiR164f osamiR164c sbimiR164c ptcmiR159e athmiR160a ptcmiR159f sofmiR159e athmiR158a athmiR159a athmiR157a athmiR394a ptcmiR169z ptcmiR169y osamiR156k athmiR156a athmiR156h osamiR171g osamiR171i zmamiR171f zmamiR171c ptcmiR172g ptcmiR172i osamiR171h athmiR171c ptcmiR156k sbimiR156e osamiR393b athmiR395b athmiR391 ptcmiR319i athmiR390a osamiR171a osamiR171b mtrmiR171 athmiR173 athmiR172b* osamiR319a athmiR319a gmamiR319c athmiR170 ptcmiR169aa ptcmiR395a osamiR395t mtrmiR395a osamiR399h osamiR399a ptcmiR399d athmiR399e ptcmiR399j ptcmiR399k osamiR399k osamiR399j zmamiR399b ptcmiR396f osamiR395w osamiR395u osamiR395v athmiR402 athmiR400 osamiR395a mtrmiR395b osamiR395c osamiR398b athmiR398a athmiR397b ptcmiR397c athmiR417 osamiR417 osamiR418 athmiR418 athmiR404 athmiR405a athmiR401 athmiR403 mtrmiR399d ptcmiR399l ptcmiR399h osamiR396d ptcmiR397b osamiR396a athmiR416 osamiR416 athmiR415 athmiR414 osamiR415 osamiR414 athmiR413 sofmiR408e osamiR413 osamiR440 osamiR442 osamiR408 athmiR407 athmiR406 athmiR419 osamiR419 athmiR420 osamiR420 osamiR809a osamiR808 osamiR807a osamiR806a osamiR437 osamiR438 osamiR441c osamiR439h osamiR444 osamiR443 osamiR445d osamiR435 athmiR426 osamiR426 osamiR811a osamiR810 osamiR812a osamiR813 osamiR814a osamiR815a osamiR816 osamiR818a osamiR817 MAC6

microRNA atlas of wheat germ

microRNA atlas of Arabidopsis C24
To know what are those wheat germ or Arabidopsis C24 microRNAs on the maps, point your mouse to any miRNA spot to display the miRNA name; click the spot and you will be linked out to specific miRNA in miRBase to find the functions of the miRNA.

REFERENCES:

  • Haley, B. Tang, G. and Zamore P.D. (2003) In Vitro Analysis of RNA interference in Drosophilamelanogaster.Methods30:330-336
  • Tang, G., B.J. Reinhart, D.P. Bartel, P.D. Zamore. (2003). A biochemical framework for RNA silencing in plants. Genes Dev 17: 49-63
  • Reinhart, B.J., Mallory, A.C., Rhoades M.W.,Tang, G., Zamore, P.D., Barton, M.K.,  and Bartel, D.P. (2004). MicroRNA control of PHABULOSA during leaf development: importance of pairing to the miRNA 5' region .EMBO J. 23: 3356-3364.
  • Tang, G. and Zamore, P.D.(2004) Biochemical dissection of RNA silencing in plants, "Methods in Molecular Biology; mRNA Processing and Metabolism- Methods and Protocols" edited by Daniel R. Schoenberg , Ohio State University, Clumbus, OH, USA. HUMANA PRESS ,Vol. 257: 223-243.
  • Tang, G. (2005) siRNA and miRNA: an insight into RISCs. Trends in Biochemical Sciences30: 106-114.
  • Xiang, Y. and Tang, G. (2006) RISC Biology, “microRNA: Biology, Function and Expression” edited by Clarke, N.J and Sanseau, P, DNA Press.
  • Wang-Xia Wang, Xun Zhuang, Venugopal Mendu, Bobby Gaffney, Xiaoqing Tang, Ben Willcut, Randy Dinkins, and Guiliang Tang (2007) Monitoring global microRNA expression in plant development and in response to abiotic stresses with a simple filter array technology. (Submitted)
  • Xiaoqing Tang, Jozsef Gal, Xun Zhuang, Wangxia Wang, Haining Zhu, and Guiliang Tang (2007) A simple array platform for microRNA analysis and its application in mouse tissues. RNA 13: 1803-1822 (Supplementary data: Fig-S1-5 and TableS1-3)

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Contact Dr. Guiliang Tang with any
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