#!/bin/bash

export MY_FFTW_PATH=~/code/fftw
export MY_GROMACS_PATH=~/code/gromacs

tar -zxf fftw-3.1.2.tar.gz
cd fftw-3.1.2
./configure --enable-float --prefix=${MY_FFTW_PATH} --enable-mpi
make
make install
make clean

cd ~/code/
tar -zxf gromacs-3.3.1.tar.gz
cd gromacs-3.3.1/
#CPPFLAGS=-I${MY_FFTW_PATH}/include \
#LDFLAGS=-L${MY_FFTW_PATH}/lib ./configure --prefix=${MY_GROMACS_PATH}  
#make 
#make install 
#make clean


export CPPFLAGS="-I/opt/mpich/p4-gnu/include  -I${MY_FFTW_PATH}/include"
export LDFLAGS="-L/opt/mpich/p4-gnu/lib  -L${MY_FFTW_PATH}/lib"
export LIBS=-lmpich 
export MPICC=cc 
./configure --prefix=${MY_GROMACS_PATH} --enable-mpi 
make 
make install 
make clean